| Group |
Software |
Contact |
Simulated primates |
Simulated mammals |
Real flys |
| CRG Barcelona | tCoffee / Robusta | Cedric Notredame | Yes | Yes | Yes (2) |
| European Bioinformatics Institute | Compara, EPO Pipeline, MP Pipeline | Javier Herrero | Mercator-Pecan (MP) | MP, Enredo-Pecan-Ortheus | No |
| Northern Illinois University | Auto-Multiz (Automz), Multiz-TBA (TBA) | Minmei Hou | Yes (2) | Yes (2) | Yes (2) |
| Softberry group | GenomeMatch | Peter Kosarev | Yes (3) | Yes (3) | Yes (3) |
| UC Davis / iThree Institute, Australia | progressiveMauve, Mugsy | Aaron Darling | Yes (progressiveMauve, Mugsy) | Mugsy | No |
| UC Santa Cruz-Cactus | Cactus Pipeline | Benedict Paten | Yes | Yes | Yes |
| UC Santa Cruz-Multiz | Multiz Pipeline | Brian Raney | Yes | Yes | Yes |
| U of Illinois, Urbana-Champaign | PSAR-Align | Jian Ma, Jaebum Kim | Yes | Yes | No |
| University of Toronto, DOE JGI | Vista-Lagan | Michael Brudno, Inna Dubchak | Yes | Yes | No |