Downloads

Find links to all datasets, code and submissions.

Data

Script to download and create the correct directory structure: downloadTest.sh

Script to download and create the correct directory structure: downloadPrimates.sh

Script to download and create the correct directory structure: downloadMammals.sh

Script to download and create the correct directory structure: downloadFlies.sh

The simulation based comparison pipeline is availble at github.

Script to download primate submissions: downloadPrimateSubmissions.sh
AutoMz primates.minmei.automz.orig.maf.gz (146 M) md5sum: a2b8f4f0d405ff1f7576a23214f925bf
Cactus primates.cactus.orig.maf.gz (171 M) md5sum: 9bcfd46f8072cd2ba420e3926f41a51a
EBI-MP primates.compara.orig.maf.gz (218 M) md5sum: fbe21a3375e8304e2cf09938efb63ce1
GenomeMatch 1 primates.softberry.v1.orig.maf.gz (430 M) md5sum: 3293a1000354706593cc5b735e6afc48
GenomeMatch 2 primates.softberry.v2.orig.maf.gz (445 M) md5sum: b4dc502d8dfe96850d07291fc944be32
GenomeMatch 3 primates.softberry.v3.orig.maf.gz (2.2 G) md5sum: b4f54a90f6014c635b648d4950b9f6d5
Mugsy primates.mugsy.orig.maf.gz (201 M) md5sum: db9578c005bba4fef4d324db7134eebf
Multiz primates.ucsc.orig.maf.gz (144 M) md5sum: 715f6364cc32de5f358ae0d2f93ba24e
PSAR-Align primates.kimMa.orig.maf.gz (140 M) md5sum: be8c4e4c8a98c938bba50c410fdbe8b8
progressiveMauve primates.pmauve.orig.maf.gz (216 M) md5sum: 5d38269a28b5c8f5e3badb6e1d533e06
Robusta primates.robusta.orig.maf.gz (211 M) md5sum: 6bbe1c49957a75e153613d793bcd8b1d
TBA primates.minmei.tba.orig.maf.gz (148 M) md5sum: 30b853edffb2282a99881d8138558eee
Vista-Lagan primates.brudno.orig.maf.gz (160 M) md5sum: a7aab451c27f459651b5d45be66fd8db

Script to download mammal submissions: downloadMammalSubmissions.sh
AutoMz mammals.minmei.automz.orig.maf.gz (338 M) md5sum: d11c7e532cb5fec1c53fc88972afd98a
Cactus mammals.cactus.orig.maf.gz (699 M) md5sum: be53c7eeac19256aff4cc6b2f5951e82
EBI-EPO mammals.ebi.epo.orig.maf.gz (281 M) md5sum: 77886a607ee9916dd992cb39b39e0fd6
EBI-MP mammals.ebi.mp.orig.maf.gz (323 M) md5sum: 42757517496ade956ef4a6714202b3bb
GenomeMatch 1 mammals.softberry.v1.orig.maf.gz (132 M) md5sum: 2c4f7b79349dd218b2f857f043d0900d
GenomeMatch 2 mammals.softberry.v2.orig.maf.gz (138 M) md5sum: 05e48eda51df5806ea0ed052b94f23aa
GenomeMatch 3 mammals.softberry.v3.orig.maf.gz (138 M) md5sum: b6fa81fded65fc3c1522f48b21f3cbee
Mugsy mammals.mugsy.orig.maf.gz (198 M) md5sum: 9dfe46fb0b4f1fc990c536e9a47baea1
Multiz mammals.ucsc.orig.maf.gz (305 M) md5sum: 448471917deecfa223e66ad02bce95b9
PSAR-Align mammals.kimMa.orig.maf.gz (310 M) md5sum: 4bec8330cad8abfd31c0f3f03cbc8d84o
Robusta mammals.robusta.orig.maf.gz (326 M) md5sum: 41c25f36721ed44a5f93fc16e9a26fd7
TBA mammals.minmei.tba.orig.maf.gz (399 M) md5sum: b8b6d233ea5b073c47c5161222d76257
Vista-Lagan mammals.brudno.orig.maf.gz (327 M) md5sum: 613e30373f483da74e9c9940176a78ef

Script to download fly submissions: downloadFlySubmissions.sh
AutoMz flies.automz.orig.maf.gz (700 M) md5sum: 85ace54453c25115b740d07118dd2bc6
Cactus flies.cactus.orig.maf.gz (2.2 G) md5sum: 9998889073ae845edcf938e4fb224cf1
GenomeMatch 1 flies.softberry.v1.orig.maf.gz (4.7 G) md5sum: 30036f66c50f61025ac314b99b19b1b8
GenomeMatch 2 flies.softberry.v2.orig.maf.gz (5.2 G) md5sum: ae84b24d02e08b712fe43da940390bba
GenomeMatch 3 flies.softberry.v3.orig.maf.gz (6.7 G) md5sum: fc7bef4f65d799270ae9474931cedba8
Multiz flies.ucsc.orig.maf.gz (663 M) md5sum: dcd4fc8db11957908c8cfa8efa827bb5
Robusta Average Best flies.robusta.aveBest.orig.maf.gz (1.1 G) md5sum: 38a80d52b001ec54c6bf81a131b84bf7
Robusta Best Pick flies.robusta.bestPick.orig.maf.gz (1.1 G) md5sum: 6d98cd48e6f7bf750847f90a702fc03c
TBA flies.tba.orig.maf.gz (1.5 G) md5sum: 4a5679048098f25a3e56433bfc3ee365