### Simulated data

This folder contains different simulated paired-end RNA-seq datasets. The “r1" datasets are the newest versions used in the most recent version of the manuscript. The simulated data ending with “_uni" are generated using an uniform expression profile. “_h1” and “_h2” denote which haplotype the data was simulated from. 

File types:

 “.isoforms.results”: Expression profile used in simulation.

 “.fq.gz”: Simulated RNA-seq reads.

 “.gam”: True graph alignments for the simulated RNA-seq reads.

 “.txt.gz”: Table with the true transcript path and position for each simulated RNA-seq read.


Updates:

* 03/16/2021: Added simulated datasets

* 01/03/2022: Added newest version of the simulated datasets (r1)